tv.qiagenbioinformatics.com marketingbiox@qiagen.com https://tv.qiagenbioinformatics.com Watch tutorials, interviews and much more on our web based TV channel! en-us Visualplatform http://blogs.law.harvard.edu/tech/rss tv.qiagenbioinformatics.com CLC bio TV Watch tutorials, interviews and much more on our web based TV channel! clc bio tv, bioinformatics, genomics, research episodic no https://tv.qiagenbioinformatics.com/files/rv0.0/sitelogo.gif https://tv.qiagenbioinformatics.com http://tv.qiagenbioinformatics.com/photo/77585467/de-novo-assembly-blast-and-genome <p>This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.</p> <p>Participants will learn the following:</p> <p>o Download and install needed plugins.</p> <p>o Import data required for the analysis.</p> <p>o Run the de novo assembly workflow.</p> <p>o For long reads, improve a de novo assembly by polishing with short, high-quality reads.</p> <p>o Map reads to a reference and visualize an assembly.</p> <p>o For long reads, correct raw long reads for further analysis.</p> <p>o Use BLAST to investigate the contigs.</p> <p>o Analyze and assemble contigs through Genome Finishing tools.</p><p><a href="http://tv.qiagenbioinformatics.com/photo/77585467/de-novo-assembly-blast-and-genome"><img src="http://tv.qiagenbioinformatics.com/64968569/77585467/392c6e140b7afc71efd462bfa5906877/standard/download-14-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/77585467 Tue, 27 Jun 2023 15:39:00 GMT De novo assembly, BLAST and genome finishing using QIAGEN CLC Genomics Workbench This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing. Participants will learn the following: o Download and install needed plugins. o Import data required for the analysis. o Run the de novo assembly workflow. o For long reads, improve a de novo assembly by polishing with short, high-quality reads. o Map reads to a reference and visualize an assembly. o For long reads, correct raw long reads for further analysis. o Use BLAST to investigate the contigs. o Analyze and assemble contigs through Genome Finishing tools. This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and... tv.qiagenbioinformatics.com 01:31:30 <p>This webinar will introduce users to the tools available for short reads (Illumina) as well as long reads (Oxford Nanopore, Pac Bio) de novo assembly in CLC Genomics Workbench. It will also go over other useful functionalities such as BLAST and genome finishing.</p> <p>Participants will learn the following:</p> <p>o Download and install needed plugins.</p> <p>o Import data required for the analysis.</p> <p>o Run the de novo assembly workflow.</p> <p>o For long reads, improve a de novo assembly by polishing with short, high-quality reads.</p> <p>o Map reads to a reference and visualize an assembly.</p> <p>o For long reads, correct raw long reads for further analysis.</p> <p>o Use BLAST to investigate the contigs.</p> <p>o Analyze and assemble contigs through Genome Finishing tools.</p><p><a href="http://tv.qiagenbioinformatics.com/photo/77585467/de-novo-assembly-blast-and-genome"><img src="http://tv.qiagenbioinformatics.com/64968569/77585467/392c6e140b7afc71efd462bfa5906877/standard/download-14-thumbnail.jpg" width="75" height=""/></a></p> FAS Training long reads http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in <p>This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. <p>Participants will take away how to:</p> <p>• Download Plugin for Long read support<br> • Import data required for the analysis<br> • De novo assembly of a microbial sized genome using long, error-prone reads<br> • Improve a de novo assembly from long reads by polishing with short, high-quality reads<br> • Map long reads to a reference and visualizing an assembly<br> • Correct raw long reads for further analysis</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in"><img src="http://tv.qiagenbioinformatics.com/64968568/74718508/774fa2c025f181f102bfc872e909ccc4/standard/download-21-thumbnail.jpg" width="75" height=""/></a></p> http://tv.qiagenbioinformatics.com/photo/74718508 Thu, 24 Mar 2022 07:45:16 GMT Long-read sequencing analysis in the QIAGEN CLC Genomics Workbench This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. Participants will take away how to: • Download Plugin for Long read support • Import data required for the analysis • De novo assembly of a microbial sized genome using long, error-prone reads • Improve a de novo assembly from long reads by polishing with short, high-quality reads • Map long reads to a reference and visualizing an assembly • Correct raw long reads for further analysis This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the... tv.qiagenbioinformatics.com 01:02:03 <p>This tutorial is an introduction to working with the tools in the Long Read Support (beta) plugin. The Long Read Support (beta) plugin is a collection of tools developed for working with long, error-prone reads such as those produced by the single-molecule sequencing technologies of Pacific Biosciences or Oxford Nanopore Technologies. <p>Participants will take away how to:</p> <p>• Download Plugin for Long read support<br> • Import data required for the analysis<br> • De novo assembly of a microbial sized genome using long, error-prone reads<br> • Improve a de novo assembly from long reads by polishing with short, high-quality reads<br> • Map long reads to a reference and visualizing an assembly<br> • Correct raw long reads for further analysis</p></p><p><a href="http://tv.qiagenbioinformatics.com/photo/74718508/long-read-sequencing-analysis-in"><img src="http://tv.qiagenbioinformatics.com/64968568/74718508/774fa2c025f181f102bfc872e909ccc4/standard/download-21-thumbnail.jpg" width="75" height=""/></a></p> clc genomics workbench tutorial FAS Training genomics workbench long reads